PathLay
  • Welcome to PathLay’s documentation!
  • Features
  • Requirements
    • For Building the Docker Image (Recommended)
    • For the Apache Server Installation
  • Installation
    • Installation on Linux
      • Installation using Docker (Recommended)
      • Installation with .deb package
      • Apache Server Installation
  • How to run
    • Run PathLay as network server with Docker
    • Run PathLay as local server with Docker (localhost)
  • Usage
    • Account Managing
      • Register a New Account
      • Login to an Existing Account
    • Experiment Package
      • Configuration File
      • Datasets Files
      • Supported IDs
    • Database Configuration
      • Organism Selection
      • Interaction Files
      • Pathway Files
      • Alternative installation
    • Home Manager
      • Creating an Experiment Package
        • Adding a new Experiment Package
        • Uploading a new Experiment Package
      • Editing an Experiment Package
        • Edit Experiment’s General Information
        • Configure a Dataset
        • Gene Ontologies
      • Downloading an Experiment Package
    • Configuration Page
      • Maps Databases
      • Data Selection
      • Configuring Filters for a Dataset
        • Filtering Options
        • ID Preservation
        • Transcription Factors
          • Transcription Factors ID Preservation
        • Non Differentially Expressed IDs
          • Loading Non Differentially Expressed IDs from TFs
      • Maps Restriction Procedure
        • Pooling
        • Intersect
    • Pathway Explorer
      • Pathway Navigation
      • Indicators
      • Main Menu
      • Highlighting Feature
      • The Clipboard
      • The Selectors Section
        • Select by IDs
        • Select by Agreement
      • Settings
        • Transparency and Size
        • Screenshot
  • License
  • Support
  • Contribute
PathLay
  • Installation
  • Installation on Linux
  • Installation using Docker (Recommended)
  • View page source

Installation using Docker (Recommended)

  1. Obtain the Docker image by pulling it from Docker Hub :

    docker pull vonb/pathlay:latest
    
  2. Download the docker-compose.yml

  3. Navigate to the directory with the downloaded docker-compose.yml files:

    cd directory
    
  4. Create the “pathlay_users” directory:

    mkdir pathlay_users
    
  5. Create the “pathlay_data” directory:

    mkdir pathlay_data
    
  6. Build the image from docker-compose.yml:

    docker compose build
    

To run the container from this image check How to run.

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© Copyright 2022, Matteo Ramazzotti Lorenzo Casbarra.

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