Supported IDs
PathLay supports a variety of ID types as input which are converted to the ID default type during analysis. All the ID types are summarized at Table and some examples are provided at Table.
Dataset Type |
Supported Input IDs |
ID Type for Analysis |
|---|---|---|
Gene |
Entrez Gene ID; Ensembl; Gene Symbol; |
Entrez Gene ID |
Protein |
Entrez Gene ID; UniProtKB Entry; Protein Symbol; |
Entrez Gene ID |
miRNA |
miRBase ID |
miRBase ID |
Metabolite |
KEGG Compounds; Compound Name; |
KEGG Compounds |
Methylation |
Entrez Gene ID; Ensembl; Gene Symbol; |
Entrez Gene ID |
Chromatin Status |
Entrez Gene ID; Ensembl; Gene Symbol; |
Entrez Gene ID |
ID Type |
Example |
|---|---|
Entrez Gene ID |
2308 |
Gene Symbol |
FOXO1 |
Ensembl |
ENSG00000150907 |
UniProtKB Entry |
Q12778 |
Protein Symbol |
FOXO1 |
miRBase ID |
hsa-miR-183-5p |
KEGG Compounds |
C03758 |
Compound Name |
Dopamine |