Welcome to PathLay’s documentation!

• Features

• Requirements

  • For Building the Docker Image

  • For the Apache Server Installation

• Installation

  • Installation on Linux

    • Building the Docker Image

    • Installing from Deb

    • Apache Server Installation

• How to Run

  • Run PathLay as Server

• Usage

  • Account Managing

    • Register a New Account

    • Login to an Existing Account

  • Experiment Package

    • Configuration File

    • Datasets Files

    • Supported IDs

  • Home Manager

    • Creating an Experiment Package

    • Loading an Experiment Package

    • Gene Ontologies

    • Downloading an Experiment Package

  • Configuration Page

    • Maps Databases

    • Maps Restriction Procedure

    • Data Selection

    • Configuring a Dataset

    • Filtering Options

    • ID Preservation

    • Non Differentially Expressed IDs

    • Transcription Factors

    • Transcription Factors ID Preservation

    • Loading Non Differentially Expressed IDs from TFs

  • Pathway Explorer

    • Pathway Navigation

    • Indicators

    • Main Menu

    • Highlighting Feature

    • The Clipboard

    • The Logical Section

      • Select by IDs

      • Select by Agreement

    • Settings

      • Transparency and Size

      • Screenshot

• Contribute

• Support

• License